Package index • pacbiowdlR

Package Overview An overview of pacbiowdlR.
`pacbiowdlR` `pacbiowdlR-package`	pacbiowdlR: Plotting DNA Copy Number Alterations from PacBio WDL Data
CNA Plot Functions Reference documentation for functions to create and customize CNA plots.
`read_json_file()`	Read and parse JSON file with path substitution for mounted drives
`CNA_plot()`	CNA Plot: Generate a Genome-Wide CNA Plot
`CNA_plot_highlight()`	CNA Plot with Gene Highlighting
`plot_fusions()`	Plot genomic fusions using circos plots
`get_fusions_from_vcf()`	Extract Fusions from VCF and Generate a Circos Plot
`plot_snpEff()`	Plot SnpEff Annotation Impact Distribution
`print_fusion_matches()`	Print fusion matches in a readable format
`generate_offsets()`	Generate Cumulative Genomic Offsets
`compute_weighted_log2_ratios()`	Compute Weighted Log2 Ratios
`weighted_segment_log2()`	Weighted Segment Log2

Reference